rs37520604 SNP Detail

Summary

• ID
  rs37520604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42146492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCCTTC TTTATGAGTT
  CATTTGCATT TCCCTCTGTA ACTTCTAGCC TGTTCAGTTA CACAAAACTG TCACCCAGAT
  AGGGTTCCTT TGAGTTTCTT TCTGTCGCCA GCCTGAAGGA CTGTAACGAA ACCCAGCTAT
  TACAAACCTG GATTACATCA GCTTTTCTCG TCCCGGGTGA CAGGGGTGTT AGAGACTTCC
  Y
  TTCAGGTTAG AGGTTCCCTC GCTGTGCCAA GCCCAGCTCT CCTGCTTCCT CTGCTGGTTC
  CTGTCTGCCA GATGTGCACA GACAACCCCG AAACCCAGAC ACTCCTTCAG TGTAGTCACC
  TGGCCTGCCC GCAGCCTGCT TTCTCAGTCC CTCCTGCCTC TCACAGGCTC CTCACAACCT
  CTTCTGTGGC TCCTGGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50819749	NES13534961	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37520604					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50819749	NES13534961	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42146492 () rs orientation: forward

Symbol	Name	Function Class
Gm6937	predicted pseudogene 6937	1616 bp upstream
Rr547837	regulatory region 547837	41 bp proximal
Tssr156487	transcription start site region 156487	1575 bp upstream