rs37519814 SNP Detail

Summary

• ID
  rs37519814
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108041678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCG CGGGTTCTAG ATCTTTATAT
  W
  CTCTGGACTG TATTTTCTCC CTCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51821996	NES14764683	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	T		A	T	A		A
ss133494217	ENSMUSSNP2908920	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321891475	CHEV_6_108014711	CHEVERUD	SCREENING_POP	f	SNP									A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37519814					SNP	A	A	A	A	A	A	A	T	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51821996	NES14764683	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108041678 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	within coordinates
Rr399804	regulatory region 399804	176 bp upstream
Rr399805	regulatory region 399805	482 bp upstream
Rr399806	regulatory region 399806	1002 bp upstream
Rr636028	regulatory region 636028	within coordinates
Rr636029	regulatory region 636029	255 bp proximal
Rr636030	regulatory region 636030	581 bp proximal
Rr636031	regulatory region 636031	1086 bp proximal
Setmar	SET domain without mariner transposase fusion	328 bp upstream
Tssr58052	transcription start site region 58052	318 bp upstream