rs37519681 SNP Detail

Summary

• ID
  rs37519681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135870996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAGCAT TACTTCCAAC
  CTCTGGATGT GGAACCTCAT TGATGAGTTC ACTCCTGGGA CTGCCTTTTC TGTTCATGCC
  TACAGATAAT GAGGGGGAAT ACTGCACACA TGTCCGATGA GATATTAATC TTTGAAGGTG
  TATAGTTCCA CCTAAATATT GTTAACTTGC TTTGGCATAG TGGGCATTTT CTTGCTATGG
  Y
  TGAACATTTT CAAATTTTAG TAGTGTTCTA CATATCGACT GTTCTTGCCT GTATCATCAG
  AAATCTACTC TCTAGGAAGC ATCTTAAGAG GCTTCAGTGC TGAGAGGAAA CATCTCAAGC
  TGGACACAGG GTTTCACTGC TATACTGTGC CTTTGACTTT GGTTCCGTAA TTATGACTTC
  CTGGCAGAAA GTTGATTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51642413	NES14646556	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37519681					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51642413	NES14646556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135870996 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Rr585808	regulatory region 585808	99 bp proximal
Tssr35842	transcription start site region 35842	1929 bp downstream