rs37498804 SNP Detail

Summary

• ID
  rs37498804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113359379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGACTGA GGAGGGACAG
  CCCAAGACCA GCCTGGGCTA CTTGGTGAGT CCCTACCTAA AAAACAAAAC AAAAAGTTGG
  TCAGTAGAAA ATAATGCCAA CAGCCCTTAT CATAGGCCTG GCAAGGCCAT GGGGGTCAGT
  TAGGTGTTGG AGCAGAGAAG GTTTCTAACA GGTGATGGCT GTGTGCTCTT AGGGCAGTTC
  Y
  AGCACTGGTT TGATAGTCAG TTTCTGAAAT TGCCACACAA CACATGCATA TACAGAATTC
  TCAAAAAAAA AAAAAAAAAA AAAAAAAAAG AGAAAAGAAA AGAAAAAAGA AAGAAACCAG
  ACTATCCAAT TCTAGCTTTT CTTTCAGAAA CAGCTGTGTA AGCCAGCAGT GTGTGGGATG
  ATACACCCAG AGTCAGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51841891	NES14761379	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37498804					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841891	NES14761379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113359379 () rs orientation: forward

Symbol	Name	Function Class
Arpc4	actin related protein 2/3 complex, subunit 4	Intron
Rr636502	regulatory region 636502	663 bp distal
Rr636503	regulatory region 636503	1955 bp proximal
Tssr58200	transcription start site region 58200	1671 bp downstream