rs37497405 SNP Detail

Summary

• ID
  rs37497405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130963741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGGCCT CAGACTCTCA
  GACCTCCTCC TCATCCTCCA AGTGTTTGGG TCACACAGGG GCATGTGATG CCATGTCCTG
  CCGATTTCCA GTTCTTTATC CATAATTTCC CTTTTCCATA AAAGAGAAAC CTAGACAGTA
  GTTATGCAAC TATGTTTAAA TGCTATCTAT CCTTCTATCC ATCTTGTTAG TTGAAAATGG
  Y
  GCAGTCCTGG TCATATCAGC ACAGCTCTCA TAAAAGAGGC CCTTTATTGA AAGGGGATGG
  GGAGAGAAAC GAGGAAGAAG AGAGAGGAAA AAAAAGAGGG GTGGTGGTCT GGGTCCCTGT
  CTTTTATCTG GGCTGTGAAG TAGGTGACCC AGGTGATGAC GCACACAGGT GATGCAGATG
  AAACATGTGC AGGGAGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51634946	NES14649612	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37497405					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634946	NES14649612	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130963741 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lef1	lymphoid enhancer binding factor 1			Intron
				Noncoding-Transcript-Variant
Rr585283	regulatory region 585283			406 bp proximal
Tssr31716	transcription start site region 31716			328 bp upstream
Tssr31717	transcription start site region 31717			1610 bp upstream
Tssr35679	transcription start site region 35679			1347 bp downstream