rs37485165 SNP Detail

Summary

• ID
  rs37485165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113459656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGCCCGT GGCTCCCGCA
  CGGCCTTGCT CCTCCACTCC GCCGACGGAG CGGGCTACGA GCGTCTGGTG GGAGCACTGG
  CGTCCGCGTT GAGCCAGATG CCACTGCGCG TGGCCGTGGA CCTGTGGAGC CGCCGCGAGC
  TGAGCGCGCA CGGAGCCCTA GCCTGGTTCC ACCACCAGCG ACGCCGTATC CTGCAGGAGG
  R
  TGGCGTGGTA ATCCTTCTCT TCTCGCCCGC GGCCGTGGCG CAGTGTCAGC AGTGGCTGCA
  GCTCCAGACA GTGGAGCCCG GGCCGCATGA CGCCCTCGCC GCCTGGCTCA GCTGCGTGCT
  ACCCGATTTC CTGCAAGGCC GGGCGACCGG CCGCTACGTC GGGGTCTACT TCGACGGGCT
  GCTGCACCCA GACTCTGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51841171	NES14767616	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37485165					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841171	NES14767616	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113459656 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Creld1	cysteine-rich with EGF-like domains 1			661 bp upstream
Gm57002	predicted gene, 57002			within coordinates
Il17rc	interleukin 17 receptor C			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr399833	regulatory region 399833			420 bp upstream
Rr636532	regulatory region 636532			511 bp proximal
Rr636533	regulatory region 636533			1169 bp proximal
Tssr58220	transcription start site region 58220			603 bp upstream
Tssr58221	transcription start site region 58221			634 bp upstream
Tssr58222	transcription start site region 58222			717 bp upstream
Tssr58223	transcription start site region 58223			754 bp upstream
Tssr58224	transcription start site region 58224			818 bp upstream
Tssr58225	transcription start site region 58225			833 bp upstream
Tssr58226	transcription start site region 58226			889 bp upstream
Tssr62453	transcription start site region 62453			461 bp downstream
Tssr62454	transcription start site region 62454			475 bp downstream