rs37480678 SNP Detail

Summary

• ID
  rs37480678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:34688074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA GCCTCCCTTT CACACCTGGG
  Y
  CTGGCTCTCA CCATCCAGCC TATAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51270953	NES13789536	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	C	T	T	C	C		C	T	C	C		T
ss321782453	CHEV_6_34661139	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37480678					SNP	C	T	T	T	T	C	T	T	C	C	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51270953	NES13789536	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34688074 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cald1	caldesmon 1			Intron
				Noncoding-Transcript-Variant
Gm38787	predicted gene, 38787			1156 bp downstream
Rr628363	regulatory region 628363			1495 bp distal
Rr628364	regulatory region 628364			501 bp distal
Tssr55522	transcription start site region 55522			1693 bp downstream
Tssr55523	transcription start site region 55523			1642 bp downstream
Tssr55524	transcription start site region 55524			1597 bp downstream
Tssr55525	transcription start site region 55525			1553 bp downstream
Tssr55526	transcription start site region 55526			1504 bp downstream