rs37472055 SNP Detail

Summary

• ID
  rs37472055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151950791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGGCCGG GTTTTAACTT
  TTTAAAAAAT TGTTTATCTG TCTTATTTAT TGGGGGGGGG GCATGCAGGT GTCAGAAGAA
  ATTTTTCAGG AGTCAGTTCT TCCTTCCTAC CATGAGTGGA CTTACAGTAG GTCACCAGGC
  TTAGTGGTAT CTTTATCTAC CTGGGCCATC TTCCCAGTCT CCAATAACAG TTTTATTATA
  Y
  GATCACCTGA ATACAGGCAG TCTCAAAATT AAAACTAGAA CCTTTGCTTG TAAGCTATTG
  ACAGCTGATA TATTTTACCA CGAAGAACAA TTTAATTCTG TTTTTCTGTG TCCTGGAGAT
  AAAAACACTT TGTTGAGATC TGAACTGTGG CCTGCAGACA TGGGCTCACA GGCAAAAAAG
  CAAGCAAGTT AGGACTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060320	NES13426243	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37472055					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060320	NES13426243	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151950791 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587498	regulatory region 587498	182 bp proximal
Rr587499	regulatory region 587499	530 bp proximal
Rr587500	regulatory region 587500	696 bp proximal
Rr587501	regulatory region 587501	988 bp proximal
Rr587502	regulatory region 587502	1287 bp proximal
Tssr36173	transcription start site region 36173	1293 bp upstream
Tssr36174	transcription start site region 36174	1256 bp upstream
Tssr36175	transcription start site region 36175	1167 bp upstream
Tssr36176	transcription start site region 36176	1150 bp upstream
Tssr36177	transcription start site region 36177	1121 bp upstream
Tssr36178	transcription start site region 36178	1076 bp upstream
Tssr36179	transcription start site region 36179	1954 bp downstream