rs37468349 SNP Detail

Summary

• ID
  rs37468349
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26694470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCCAGT TTACATAGAA
  TTCAATGATA GACCGGTATT TCTTTTCTTA TTATTATTCT TTTAGGTGAC ACGTCAGTTC
  TAAACAGATG ACGAGGCACC CCAACAGTGG AATGGCGGGG TAGGAAAAGT GATCAAACAC
  CATATGCACA AGGGTTTTAA AGCCCTTTGC ATCAGGGAGC CCAGAATATT GTCTCTCAAC
  K
  AGTCTACGAT ATATTGAGTC ATCTCCTTGG AAAGTAGCAT TGAAGTTGTA ACATTTTGCA
  CCCATAAACA GCCTTGCTGA ATTTTTTCAA GGATGTTGTA AAATAAAATA TTATAGCAGT
  CTGGCTTAAA GATCGCCAGA AGAGAGACTC TAACTTATCA CAGCTCTGGC TAAATTTCAA
  AATACACATG ATAAATGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51442512	NES14434355	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37468349					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442512	NES14434355	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26694470 () rs orientation: forward

Symbol	Name	Function Class
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	875 bp distal
Rr574325	regulatory region 574325	768 bp distal
Rr574326	regulatory region 574326	within coordinates
Spata16	spermatogenesis associated 16	Intron