rs37454367 SNP Detail

Summary

• ID
  rs37454367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69765924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGGAGGG ACTGTACTAA
  AGGGCTGCAG CATTAAGAAG GTTGAAAAGT ACTGGTCTAA GTGATCCGTG TACAAAGTCA
  TCACAGCGAT TAAAATTCAT GTAAATAGTG GTTACGGTAA GAGGCACAGG AGCAAACCAA
  ATGTGGAAAG CAAGCGATGA AGCTCTCCCC CCAGTTTTCT GCACACATCA TTTTAAAGGT
  Y
  TTCTGGCAAA AATGGCTGTG TATTTCTTAG TATCATTTGA TTAAAAATAA CAATTGCTGT
  CATAAAGTCT TTTACAAAAA AACCCTGTTT TAGTCAGGGT TTCTATTCCT GGACAAAACA
  TCATGACCAA GAAGCAAGTT GGGGAGGAAA GGGTTTATTC AACTTACACT TCCACATTGC
  TGTTCATCAC TAAAGGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50977796	NES13927111	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37454367					SNP	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977796	NES13927111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69765924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13263	CpG island 13263	1616 bp proximal
Rr578229	regulatory region 578229	1142 bp proximal
Rr578230	regulatory region 578230	1321 bp proximal
Rr578231	regulatory region 578231	1661 bp proximal
Rr578232	regulatory region 578232	1721 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B	Intron
Tssr903	transcription start site region 903	1264 bp downstream
Tssr33557	transcription start site region 33557	279 bp downstream
Tssr33558	transcription start site region 33558	1284 bp downstream