rs37450928 SNP Detail

Summary

• ID
  rs37450928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:131454845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGGGATG GGCGGAGAGA TGAACAGTCC CGAGAAGTAT
  TATGGGCTGC ACTGGGGGAT TTGGAGGGCC GGGGAGGGCG GTATGAGGAC CGCGGGCGGC
  R
  ACACGGCTAA GGCGGCGCCG AAAGCAGCAG CATCCGCAAC GCGTCCACCC GCCCAGTCCC
  GGTTTGTTCA GTCAGAGCAG CAGCAGCCGG GCGTACGGGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368052	NES14475969	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37450928					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368052	NES14475969	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131454845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fam72a	family with sequence similarity 72, member A			mRNA-UTR
Gm70877	predicted gene, 70877			within coordinates
Rr396286	regulatory region 396286			175 bp upstream
Rr396287	regulatory region 396287			486 bp upstream
Rr418128	regulatory region 418128			1974 bp distal
Rr418129	regulatory region 418129			473 bp distal
Rr418130	regulatory region 418130			858 bp distal
Rr418131	regulatory region 418131			within coordinates
Rr418132	regulatory region 418132			230 bp proximal
Rr418133	regulatory region 418133			1027 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2			Intron
				Noncoding-Transcript-Variant
Tssr8627	transcription start site region 8627			1828 bp downstream
Tssr8628	transcription start site region 8628			1654 bp downstream
Tssr8629	transcription start site region 8629			751 bp upstream
Tssr8630	transcription start site region 8630			794 bp upstream
Tssr8631	transcription start site region 8631			873 bp upstream
Tssr8632	transcription start site region 8632			1254 bp upstream
Tssr13589	transcription start site region 13589			1945 bp upstream
Tssr13590	transcription start site region 13590			1875 bp upstream
Tssr13591	transcription start site region 13591			1848 bp upstream
Tssr13592	transcription start site region 13592			1756 bp upstream
Tssr13593	transcription start site region 13593			1679 bp upstream
Tssr13594	transcription start site region 13594			1569 bp upstream
Tssr13595	transcription start site region 13595			1522 bp upstream
Tssr13596	transcription start site region 13596			1489 bp upstream
Tssr13597	transcription start site region 13597			1260 bp upstream
Tssr13598	transcription start site region 13598			559 bp upstream
Tssr13599	transcription start site region 13599			517 bp upstream
Tssr13600	transcription start site region 13600			362 bp upstream
Tssr13601	transcription start site region 13601			159 bp downstream
Tssr13602	transcription start site region 13602			195 bp downstream
Tssr13603	transcription start site region 13603			416 bp downstream