rs37445053 SNP Detail

Summary

• ID
  rs37445053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130054979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGACTG CTGTTTTCTC
  TGAAACTCAG GAGGAGACTT AAAAATTCCA CAGTGCAGTG TTTGGCAGAG TCAGAAGATC
  TGCAGCAGTG GCGATGGGGC TAGAAATTGG CACTCTGAAA ACAAGAGCTT TTCTGTTATT
  CTTACTATCT TTTAAATTGT GCTATATAGA TTTTTGGGTC TGGCTCATTT TACTATGTGG
  Y
  ATTTTTATTT ATCTGCAAGG GTTTTTTTTT TAATTATAAA GCTTACACAA TTTTAAAAAA
  GTCTTATTAG ACATTTAAAA TATTTTTAAA ATGTATCGCA GGCTCGTAGA ATGGGATGCC
  CATGATGGCA GTACTGGTCT AAGAAGAACT CTGTGCTCCC TGTCACCCTC TGCACTAATC
  ACCACCTCTA ACTCTAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51632411	NES14653458	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37445053					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51632411	NES14653458	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130054979 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Gm66086	predicted gene, 66086	1841 bp downstream
Rr585149	regulatory region 585149	1436 bp distal
Rr585150	regulatory region 585150	623 bp distal