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rs37442407 SNP Detail
Summary
  • ID
    rs37442407
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr18:77591198 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAGTGGAAA TGGGGTCCTG
    GTTATCTGCA ACCCCGGCCT GGAAAATGTT TGAATAATAA ATAAATGTTT ATACATTTAT
    AATATATAAA TAATAAATTA ATAAATAAAT TAATTAATTA ATGTGGGAGT GTAGCTGGCA
    TCTCCTCAGA GTTGCACAGA AATATATGAG GAACACAAGG ATGGGTTGCT GGCCCTGGGC
    M
    TGGGCAACTG TGGAAATGTC TAGTAGGCTA CCTAAAACGG AAGCCTCACT CTTGTGCGGG
    TTTCGGTTTA TACGTCCATG GAGATGGACT TTCATGACTC TGTTAGTCAT TACCACTTGC
    CCTTCCACTG TCTAAACCCG AGATTTTGGA AGTGCGTGAT TTGGGTGCTT TAAGGCATGG
    CTTCAGAACT CAGCTAAGAA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss50501566 NES13695675 PERLEGEN MM_PANEL2 f SNP C C C C C C A C C A A C A A C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs37442407 SNP C C C C C C A C C A A C A A C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss50501566 NES13695675 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:77591198 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ark2c arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C Intron
Noncoding-Transcript-Variant
Cpgi10275 CpG island 10275 956 bp distal
Rr541132 regulatory region 541132 902 bp distal
Rr541133 regulatory region 541133 1437 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory