rs37442407 SNP Detail

Summary

• ID
  rs37442407
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77591198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGGAAA TGGGGTCCTG
  GTTATCTGCA ACCCCGGCCT GGAAAATGTT TGAATAATAA ATAAATGTTT ATACATTTAT
  AATATATAAA TAATAAATTA ATAAATAAAT TAATTAATTA ATGTGGGAGT GTAGCTGGCA
  TCTCCTCAGA GTTGCACAGA AATATATGAG GAACACAAGG ATGGGTTGCT GGCCCTGGGC
  M
  TGGGCAACTG TGGAAATGTC TAGTAGGCTA CCTAAAACGG AAGCCTCACT CTTGTGCGGG
  TTTCGGTTTA TACGTCCATG GAGATGGACT TTCATGACTC TGTTAGTCAT TACCACTTGC
  CCTTCCACTG TCTAAACCCG AGATTTTGGA AGTGCGTGAT TTGGGTGCTT TAAGGCATGG
  CTTCAGAACT CAGCTAAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50501566	NES13695675	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37442407					SNP	C	C	C	C	C	C	A	C	C	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50501566	NES13695675	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77591198 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Cpgi10275	CpG island 10275			956 bp distal
Rr541132	regulatory region 541132			902 bp distal
Rr541133	regulatory region 541133			1437 bp proximal