AGAGTGGAAA TGGGGTCCTG GTTATCTGCA ACCCCGGCCT GGAAAATGTT TGAATAATAA ATAAATGTTT ATACATTTAT AATATATAAA TAATAAATTA ATAAATAAAT TAATTAATTA ATGTGGGAGT GTAGCTGGCA TCTCCTCAGA GTTGCACAGA AATATATGAG GAACACAAGG ATGGGTTGCT GGCCCTGGGC M TGGGCAACTG TGGAAATGTC TAGTAGGCTA CCTAAAACGG AAGCCTCACT CTTGTGCGGG TTTCGGTTTA TACGTCCATG GAGATGGACT TTCATGACTC TGTTAGTCAT TACCACTTGC CCTTCCACTG TCTAAACCCG AGATTTTGGA AGTGCGTGAT TTGGGTGCTT TAAGGCATGG CTTCAGAACT CAGCTAAGAA M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss50501566 | NES13695675 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | A | C | C | A | A | C | A | A | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs37442407 | SNP | C | C | C | C | C | C | A | C | C | A | A | C | A | A | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50501566 | NES13695675 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr18:77591198 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ark2c | arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi10275 | CpG island 10275 | 956 bp distal | ||||||
Rr541132 | regulatory region 541132 | 902 bp distal | ||||||
Rr541133 | regulatory region 541133 | 1437 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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