rs37442264 SNP Detail

Summary

• ID
  rs37442264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72595585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC TGGATGGTTT AAACAAGTTG
  Y
  CTAAAGTCAT TTATGAACAT TTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51695097	NES14819629	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	C	C	T		T	C		C
ss133286290	ENSMUSSNP5302860	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss321822464	CHEV_6_72568596	CHEVERUD	SCREENING_POP	f	SNP										C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37442264					SNP	T	T	T	T	T	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695097	NES14819629	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72595585 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	1407 bp distal
Gm67593	predicted gene, 67593	within coordinates
Rr399708	regulatory region 399708	1659 bp downstream
Rr632244	regulatory region 632244	1775 bp distal
Rr632245	regulatory region 632245	1845 bp distal
Rr632246	regulatory region 632246	1613 bp distal
Rr632247	regulatory region 632247	1112 bp distal
Rr632248	regulatory region 632248	801 bp proximal
Tgoln1	trans-golgi network protein	1602 bp upstream
Tssr57152	transcription start site region 57152	1684 bp downstream
Tssr61478	transcription start site region 61478	1846 bp upstream