rs37439401 SNP Detail

Summary

• ID
  rs37439401
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152724212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTTGGT TTCTGTGATC
  CGGTGCATTT CCGTTCAGGG AGACAGCCAC CATCCTTATT AGGAATCTCC TCTTGCTTTA
  ATTACTCCAA TTAGGCTCCC TCTGCCCACA TCCAATGAAT TCATTATCTG TATATTAATT
  TGTGGTGACT GATGAAAGAG AGGGCGCCCC CATTAAGATA TTAGCTGAGC TTGGCTTTGG
  M
  TGGCTGGCTG CTGAGGTTGG TTTTTTGTTG TTGTTGTTTT TTGTTTTTTT ATTTTTGTTT
  TTAGCAAAAC TTTTCCAAGG GGGCATACAT TGTTCTTATG ATAAGAAGAC CAATGAAAGT
  GTTTACTTAA GGAATTAAAA TTTGGATAAC AACACATGGG CTGAATGTTT CTAAATTCTT
  AATTTATACA ACGTCCTGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51062476	NES13894517	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	A	A		C	A	A
ss136105662	ENSMUSSNP4891297	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			A
ss321029592	CHEV_3_152681539	CHEVERUD	SCREENING_POP	f	SNP							C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs37439401					SNP	C	C	C	A	A	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51062476	NES13894517	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152724212 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587644	regulatory region 587644	187 bp distal