rs37437176 SNP Detail

Summary

• ID
  rs37437176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCGCAAC AGATTCAAGC
  TCTGCAGAGC AATGTCCGGG CTCAGTTGAT AGACATGAAG CGCCTGGAGG TAAGCCTGGC
  CCTGGCCCCA GTTTATCTCT GACTAAGAAA GACAGAAGAC ACTAGCTGCC TGTGTAGAGT
  CTACTAAATC TATTATCCAT TCAGAATAGA AGTGTCTCAC CCTAGAGAAG ACTTAAGTCC
  R
  GAAATGCGAA GGAAATTCTT GAAGGGTGAA TAGATATTTG AAAAGAACTC GCTCTGTCCC
  GTTTGCCCTC CACTGGCTGA GACCTTGGCT TCAGCTTGGA GGAGGCCCTT CAGCCAGAGT
  TTACAGGATT AGAGCCATTC TCCTTCCCCA TTCAAATTCT AAAATGGATC CAAATAGTTT
  GGATCCTCCA CACTTCCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50990086	NES13925794	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37437176					SNP	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990086	NES13925794	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937769 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1236 bp upstream
Tssr29661	transcription start site region 29661	1914 bp downstream
Tssr29662	transcription start site region 29662	1865 bp downstream
Tssr29663	transcription start site region 29663	1848 bp downstream
Tssr29664	transcription start site region 29664	1365 bp downstream
Tssr29665	transcription start site region 29665	1326 bp downstream
Tssr29666	transcription start site region 29666	1290 bp downstream
Tssr29667	transcription start site region 29667	1247 bp downstream
Tssr29668	transcription start site region 29668	253 bp downstream
Tssr29669	transcription start site region 29669	203 bp downstream
Tssr29670	transcription start site region 29670	166 bp downstream
Tssr29671	transcription start site region 29671	368 bp upstream
Tssr29672	transcription start site region 29672	471 bp upstream
Tssr29673	transcription start site region 29673	499 bp upstream
Tssr29674	transcription start site region 29674	548 bp upstream
Tssr29675	transcription start site region 29675	558 bp upstream
Tssr29676	transcription start site region 29676	568 bp upstream
Tssr29677	transcription start site region 29677	585 bp upstream
Tssr29678	transcription start site region 29678	664 bp upstream
Tssr29679	transcription start site region 29679	708 bp upstream
Tssr29680	transcription start site region 29680	731 bp upstream
Tssr29681	transcription start site region 29681	833 bp upstream
Tssr29682	transcription start site region 29682	856 bp upstream
Tssr29683	transcription start site region 29683	899 bp upstream
Tssr29684	transcription start site region 29684	924 bp upstream
Tssr29685	transcription start site region 29685	965 bp upstream
Tssr29686	transcription start site region 29686	1031 bp upstream
Tssr29687	transcription start site region 29687	1129 bp upstream
Tssr29688	transcription start site region 29688	1153 bp upstream
Tssr29689	transcription start site region 29689	1179 bp upstream
Tssr29690	transcription start site region 29690	1209 bp upstream
Tssr29691	transcription start site region 29691	1255 bp upstream
Tssr29692	transcription start site region 29692	1271 bp upstream
Tssr29693	transcription start site region 29693	1302 bp upstream
Tssr29694	transcription start site region 29694	1335 bp upstream
Tssr29695	transcription start site region 29695	1361 bp upstream
Tssr29696	transcription start site region 29696	1374 bp upstream
Tssr29697	transcription start site region 29697	1398 bp upstream
Tssr29698	transcription start site region 29698	1535 bp upstream
Tssr29699	transcription start site region 29699	1617 bp upstream
Tssr29700	transcription start site region 29700	1630 bp upstream
Tssr29701	transcription start site region 29701	1662 bp upstream
Tssr33800	transcription start site region 33800	640 bp downstream
Tssr33801	transcription start site region 33801	985 bp downstream
Tssr33802	transcription start site region 33802	1121 bp downstream