rs37414343 SNP Detail

Summary

• ID
  rs37414343
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83728909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTCCCTC TCTCCCTCCC
  TCTCCCCTCC CCCTTCCCCT TCTTCCTCTC CTTCTTCCTT TCCTTCTTCC TCCTCTCCTT
  CTTCCTCTCC CTCCTTCTCC CTCCCTCTTC TCTTTCTTTT CAGGAGCCAC CAGAGGCCAA
  CTGCAGCTAC AATAATCATG TAGGTAATTA GACACATGCC ACAAACTTGC ACCAAGGAAA
  K
  AACTTTGGCT CTAACACATG CTCCTGATTA AAGTCCCAGG TCACTCCAGC GTGCCCCTCC
  CAAACAAGAT CCCCTTCTCC ACATCAGGGC ACAAGAAAAC AGACAGTAGT TTAAGATCAG
  AAGGAGGAGA AACGGGGAGG TAGCATGGCT TCACCTTGGG TGGCTCTTCT CCCTGACAGT
  TTGCCCAGTA TGCTGAGATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51352415	NES13741802	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs37414343					SNP	G	G	G	G	G	G	G	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51352415	NES13741802	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83728909 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b1	ATPase, H+ transporting, lysosomal V1 subunit B1	Intron
Gm66892	predicted gene, 66892	within coordinates
Rr632931	regulatory region 632931	1178 bp distal
Rr632932	regulatory region 632932	1425 bp distal