rs37407431 SNP Detail

Summary

• ID
  rs37407431
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:85807509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGACGGA GAAGAGGAAG
  AGAAAAACCA TCCTATCTTC TGCAATAGAT GTTGCCCAGC CTGAGGGCAG AAGGGTCAGG
  GGAAAGGGTC CGAGGAGGCA CGAGAAGACC CATAGCTCCA GACAAAGCAT GTTCAGGTCT
  TGTTTGGTAT AGGAGAGAAT AAGAGACAGA AAAGAAGAAA AAGGAGAAGT TAGGCTTCTC
  W
  GAGTTAGGAC TACAAAGCAG GCAAGCTGCC ATGCAGGCGT GGCACTGCCT GATAGACCAG
  AGCCCTGGTT CTCAACCTTC CTAATGCTGC AACCCTCTAA TATACCCTCA CGCATGGTGA
  CCCCCAACCA TAAAATTATT TCATTGCTAC TTCATGGCTA TAATTTTGCT ACTGTTATGA
  AGTGTAATTT AAATATCTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss51034545	NES14384650	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs37407431					SNP	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034545	NES14384650	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85807509 () rs orientation: forward

Symbol	Name	Function Class
Flvcr2	feline leukemia virus subgroup C cellular receptor 2	Intron
Gm40478	predicted gene, 40478	1278 bp upstream
Rr470001	regulatory region 470001	831 bp proximal
Tssr114432	transcription start site region 114432	1198 bp downstream
Tssr117101	transcription start site region 117101	1274 bp upstream