rs37405828 SNP Detail

Summary

• ID
  rs37405828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24212586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAGAGT AGCTTCATGG
  TGACCTTTCT TTTCTTCCAG TCTTCAGTTT CTAAGGACTC CTTCCACTGG CAGAGTAAAT
  CTCCCTTTCT GGGTAATCTA GAGTAAGATC TATACTTAAG AAATTAGCAT CTAATAAGCA
  ATCTCATTTC CATCTCTAAC CTAATATTTA TCCATGTAAC TTTTACACAT TCACAGTTTA
  Y
  AGGGACTAGG AGACTGGCAT TTTGGAACAG GGTAGGTAAG TCATAAACCT GCTAAACACA
  GTTATACATT TAAGAAATAC TTTTTTAAAA AAGTTGTGTG TGTGTGTGTG TGTGCACGCG
  CACACACGCA TGCATACGTG TGCGAAGGCC CTACGGCAAC ATTAGGTGTC TTCCCTGTCT
  TCCTCTACCT TACTCACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51559422	NES14863226	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37405828					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51559422	NES14863226	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24212586 () rs orientation: forward

Symbol	Name	Function Class
Rr627208	regulatory region 627208	1842 bp proximal
Tssr59983	transcription start site region 59983	242 bp upstream