rs37399164 SNP Detail

Summary

• ID
  rs37399164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66576357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGCTAT GTGCACCAGG
  AAAGGCAGGC CCAGAGGAGG GAGGAATCTG TCTTAACTCC TGCCAGACTC AGGACTAGAC
  GCGTCTCGAC CTCACTCTTG CTCCGGACCA ACTTCCCCAG GTTGCATGGC TTTCCGGTCC
  CATAAAATAG AGGTTGCAGA TGGTGGTGAG AAGTGAGAGG GTTTCACACC CAAAAATCAT
  Y
  CCAGACGTTT GCTTGCACTG TCTACAACGA TTGTCCATCC CTTTATGTCA GGTCAGCAAT
  TACAGGAACG ATAACTGTTC TTTGTCAAGA TCTACTCCTC CTCCGCAATA ATTTAAATCA
  AATACTCACC TATCACAGTC ATTCAAAGCA TGAGGTTGGT TAATGCTGCT CCAGACATGG
  AAAAGTTTAT GTCTAAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50967448	NES13939429	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37399164					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50967448	NES13939429	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66576357 () rs orientation: forward

Symbol	Name	Function Class
Gm54200	predicted gene, 54200	within coordinates
Gm65106	predicted gene, 65106	within coordinates
Rr577861	regulatory region 577861	1327 bp proximal