rs37396225 SNP Detail

Summary

• ID
  rs37396225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83359290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGTCCTC AAGGTTCTCA
  TTAACAGCCC AGACATGAGG ATTAAAACCA GCATGTTCTG TGTTTTAGCT AAATCCCAGA
  AGTTTGTTGC AGCAATTGAA ACTCTAATCT GATGACCACT ATGCTGCTTG GAGAGGCACA
  CTCAGACTGC AGATGCCCTT CCTAGCTAGA GGGGCCTGAC TCTGAGGCCT TTGTCTCATA
  Y
  GGAGGACGGA ACGGAAAGAA TAAGGCTCTG TGGTTATGCT CAGGGTAACT TCTTTCTAAC
  CCCTTTATTT CACTTGGGGC AAGCCATGGT GGTCACAGCT ATACTTCTTT CTTGAATTTA
  TTTGGAGCTA ATAGGTGACA GTCCCTGAGC AAGGGAGGCT TGTATGACTG ACATCATTTT
  CCCCTAGAGT TAATTTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51561917	NES14683372	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T		C	T	C
ss135415331	ENSMUSSNP2009979	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37396225					SNP	C	C	C	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51561917	NES14683372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83359290 () rs orientation: forward

Symbol	Name	Function Class
Rr578862	regulatory region 578862	965 bp distal
Rr578863	regulatory region 578863	1491 bp proximal