rs37393310 SNP Detail

Summary

• ID
  rs37393310
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102061469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATGGGCA TGCCTGCAAG
  GTGACAACGG GCTCCCACAG ACAGCTCCTC ATGGAGAAGC CAGTATAAAG AATGAAGGAG
  AGGACAATGA GCCAGCTTTG AGGAACGGTC GTGAACAGAC TCAGCCATAC CCACATGTAC
  AAACGAGACA CACAACGACT TGTCACTGGC CACGTGGATG TTATGACTGC CAGCGTGCAA
  M
  CATGGCAACG CACACTCCGA GAAGTTCAGG TGGGAACAGG TCCTCTTCTT CCCTGATTTG
  CATCCACCTG TAGGGAGTCT TGCACAGCAG GGCCAGGGTT GAAGAGGGCA AACCAAGGTC
  TCTGCTTCGT TGGTTCACTG GGTCAATGAT TGGCAGTGGT GAGAGTGGGT AGTCAATTTC
  CATGAGTACA GTGTGTTGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51587468	NES14668352	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37393310					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51587468	NES14668352	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102061469 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65665	predicted gene, 65665			within coordinates
Rr582192	regulatory region 582192			853 bp distal
Rr582193	regulatory region 582193			2 bp proximal
Vangl1	VANGL planar cell polarity 1			mRNA-UTR
				Noncoding-Transcript-Variant