rs37390739 SNP Detail

Summary

• ID
  rs37390739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135222402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGTTTT GGAGAACTTC
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGTAAA CATTTGCAGG GTGTGGTGGC
  CACTGCTTGT AGTCCTGAAA GCCCAGGACT AGGGGTAGCC TTGGTTTCAT AGTGACAATT
  GAAAAGCAAA ACACAAAACA AACAAGCAAA CAATAAATAG CAGTGCTCTG ACATAGTAGG
  Y
  TTTTGAAGAA TGAATGTGAA ACAAGGCATA ACTAGATTTT CTGTTCTTCT TGATAAATTT
  AACCATGGCA CTAAAGTGGG CATTTTTGGT TATAATAATC ATAATAGCCA TCACCATCTG
  TATAGCAAAT GACAGTAATA ATAATGTACA GCAAACTAAG TCTGCATTTC TCAGCCTACG
  TACAGTTTGG TTGGGCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51651935	NES14651235	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37390739					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51651935	NES14651235	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135222402 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Manba	mannosidase, beta A, lysosomal			Intron
				Noncoding-Transcript-Variant
Rr585732	regulatory region 585732			within coordinates
Rr585733	regulatory region 585733			1037 bp proximal