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rs37388190 SNP Detail
Summary
  • ID
    rs37388190
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:135366563 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCTAATTTG AAGCCAAATA
    AGAAAGACAG ATGGGTGGTT ACTGGGGTCA GTAATGTAGC AAATTACCTT CTTCTGTCTC
    ATGGGATTCA TCTCTTGACA CTTTAAACTT TTAGAAAGGT AACTGTTAAC TTTAAATTTC
    AAAAAGAAAA TTGCTCGAAT TTAACTTTTA TGAGGAAATA AAACTGATTA GAAAAAGATT
    K
    CATGCTAGGC ATATCAGACA GCTTGTATAA CAATATTAAA AATATACATT TCCTCTAGGC
    ATCCAAAAGA GCCTACTGAG AAGCCAGGCC AGGAAGGTGG TAGCATTTGG ATAAGATGCT
    GCTGAAATAT GGAGGCAGAG GAGACATCCT CGTGTTAGGC TCCAAGTCTC TTCCTTCTTA
    ACAGCCCGTC TGAAACACTC                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss51649292 NES14653887 PERLEGEN MM_PANEL2 f SNP T T T T G T T T T G
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs37388190 SNP T T T T G T T T T G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51649292 NES14653887 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:135366563 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 Intron
Rr585759 regulatory region 585759 1397 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory