rs37387723 SNP Detail

Summary

• ID
  rs37387723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108044113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACAGAGT TTGTTGTTTT
  CGAAGTGAAA ATAACTTTAA AATTGTATAG CTTTCCCCCA TCCAGAATAA GAACAAATTA
  GGGCTGCTCT TTCTTCCTTC TAGGATTTTA TGAGCAGAAA ATGGGATAAT ACATTCTATA
  GCAGATTTCA AAAGGTGAAG CAGGATTTCA ATGTGAGAAA TAGCGCCCTC TCATCTATGA
  Y
  TCATAGCCAG CAACACACAT CTGCATTTGC ATTGACAGTT TATTAATAAC ACAAGTAGAT
  AATACTCCAT GTACCAATGA GCTCTTAAGG CTTGGTCAAG ATCAAACATT CCAGGATGTC
  TGCGAAGACC ACCTATTTTT TTTCTTTATT CATCAAATAG TCGAGTGACT ATAATATACC
  AGGCACTGTA TTAGACGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss51821954	NES14764697	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C		T	C		C
ss321891485	CHEV_6_108017146	CHEVERUD	SCREENING_POP	f	SNP						T			C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs37387723					SNP	T	C	T	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51821954	NES14764697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108044113 () rs orientation: forward

Symbol	Name	Function Class
Rr399804	regulatory region 399804	1959 bp downstream
Rr399805	regulatory region 399805	1652 bp downstream
Rr399806	regulatory region 399806	1132 bp downstream
Rr636030	regulatory region 636030	1833 bp distal
Rr636031	regulatory region 636031	1328 bp distal
Setmar	SET domain without mariner transposase fusion	Intron