rs37379857 SNP Detail

Summary

• ID
  rs37379857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152722472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGAGGGA GAGAGGGGAG
  GGTGAGGGGA CGAGGGAGAG CGGGTGGCAG AGAGAGCAGA ATGCCCAAGG CTAGCCCCTA
  TGCATCCTCT TCACCCACAG GAGAACTTGG CTGCTCCTAA CAAAATCTTG AAACTCACAG
  AACAATCTTG AAAGTGACTT CCTAGCAGGA ATAGAACTTC CTGTTGCATT AGGCCATGAC
  R
  TTTGGCACCT GGTGTGGGTG ACTGTATTCT TGGCGTGCTA GGAGCTATTG AGCCTTAGCA
  GTTGGGTGTC TGCTAGAGTT CAGAGCCAAT TTGGGGCTGA GTGAGACAGG TTAGGTTTGT
  AGGTAGGTTT GTGGTCCCTA CTGGCTGGTA GTGCATCTTC CTTCATTTCT ATTCTGTTTC
  CCTGTGTTAT ATAGAATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51062506	NES13894502	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	G	G		A	G	G
ss136105635	ENSMUSSNP1220943	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss321029583	CHEV_3_152679799	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs37379857					SNP	A	A	A	A	A	A	A	G	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51062506	NES13894502	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152722472 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587644	regulatory region 587644	1224 bp proximal