rs37379140 SNP Detail

Summary

• ID
  rs37379140
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17027533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAGATCA CTAAGCCTTT
  ATTAAACTCA GTCTTAGTGA AGTTGTAAGA GAACAAATTC TATTTAAACA GAAAAAGTGA
  GGTGGTGTCT TTCTCATCAG TAACCACAGA AATATAGAGC CCGAGTGAAG AAGATTGTAA
  TTTCAAGGCC ATCTTGGCCA TATAGAAAGA TCTTGTTTAA ATATACACAC ATAAAGAGCA
  M
  AACTAAACCA GTTGCATATT TTTGCTATTT CCACAACCAC GGTGTTCGCA TATAAAGCAC
  AAGAATATCA ATAGATTTGA AAATAATATA AATAAAAGTT AGTTTGCAAT TCAAGTGTAT
  TTGTAGAAGT AGTTATGACC GCCATATATG GATGCTCCTT GTTTGGTGAA GGAAATTGCT
  TATTTCAGAA TAACGAGTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51242733	NES13804876	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		A	C	C	C		C
ss321753303	CHEV_6_16977534	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37379140					SNP	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242733	NES13804876	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17027533 () rs orientation: forward

Symbol	Name	Function Class
Rr626745	regulatory region 626745	91 bp proximal
Rr626746	regulatory region 626746	206 bp proximal