rs37365198 SNP Detail

Summary

• ID
  rs37365198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68490533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGGGGT ACCATAAAGC
  CCACTGAGCC GTGTTTATAT CACAAGTCCA ACACAAATTG AATTTAAAAA ACATTTATGG
  AGGTAAACAG CTAAAGGTGA GCCTGTGAGC AGAGGTTGAG ATGCCGGAAC AAGGTTCTAT
  TGAACGGCAT TTCCCTTCAG AACTGTTCTC AGCCATGCTG CTGTTGCTCA GGAATGTGTA
  Y
  GGAGGATTTG ATTGACGAGT GCATTTGCAA TTTTCCGTGT GAACATTTCA GAAGGTAAGG
  CCCGTTGCTA AGTGGAAGCT TGGCCTTTGA GTTCTTCTGT GGCTGGTTGT CCCTGCACGC
  TGTTGTTTTG AAGCAATCAC TTTTTTTTTT AGTTGTTTAT GGGAGTATTA ATGTAATGTG
  TATGAGTATG CCCGAGCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51542858	NES14685742	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37365198					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51542858	NES14685742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68490533 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr578030	regulatory region 578030	1231 bp distal
Rr578031	regulatory region 578031	1417 bp distal
Rr578032	regulatory region 578032	512 bp distal
Rr578033	regulatory region 578033	489 bp proximal
Rr578034	regulatory region 578034	1842 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr899	transcription start site region 899	932 bp upstream
Tssr29468	transcription start site region 29468	903 bp upstream
Tssr29469	transcription start site region 29469	954 bp upstream
Tssr29470	transcription start site region 29470	984 bp upstream
Tssr29471	transcription start site region 29471	1012 bp upstream
Tssr29472	transcription start site region 29472	1110 bp upstream
Tssr29473	transcription start site region 29473	1136 bp upstream