rs37354436 SNP Detail

Summary

• ID
  rs37354436
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143912717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAACATG CTACAGTTAA
  AAATTATTTT TATGGATTTG TATTTAACGT TGTGTTCTTA TGATCATTCA CCTTAAAAGC
  TTTTTTATTA AAAAAAAATC AACGTGATAA TAATTGGAAT GTCCTATACA GACAACAGCT
  GCAGAAGGTC ATGATGAAAA CAGACCAATT TAGGAAAGAG GTTTTTTTAT TATTATTATT
  W
  TTTTGTCCTA ACAAAAAACC CAAAGCAAAG CAAAACAATA ACCTCAAAGG AGGAGAGGAC
  ACTTTAAGAT ATAAGACATT GTAATATCTG GGTTCATCTC TGACTCATTA CAATTTAAAT
  CAATCAAAAC TAGGCAATCA GGGATTTTTT GCTTTTAAGA CCAGATGCAG AAGTAGATAT
  ACTTCTGCTT CCCCTCTGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51655517	NES14643414	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A	T	A	A	T	T	T
ss136029274	ENSMUSSNP4087359	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs37354436					SNP	T	T	A	A	A	T	A	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51655517	NES14643414	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143912717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13895	CpG island 13895	996 bp distal
Lmo4	LIM domain only 4	1736 bp upstream
Rr398096	regulatory region 398096	1176 bp downstream
Rr586601	regulatory region 586601	1747 bp distal
Rr586602	regulatory region 586602	1246 bp distal
Rr586603	regulatory region 586603	508 bp proximal
Tssr35970	transcription start site region 35970	1975 bp upstream
Tssr35971	transcription start site region 35971	1748 bp upstream
Tssr35972	transcription start site region 35972	1426 bp upstream
Tssr35973	transcription start site region 35973	971 bp upstream