rs37350399 SNP Detail

Summary

• ID
  rs37350399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69768942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGTGGTTG GGGGGCTGGG AATGAGCCAG TGGAACACAT
  GCCCATGCTT GGTGCTTTTT ACAGCTCTCT TTCCTTTCAG CTCTTGTATT TAGTGCTTTT
  R
  TTTCTTAACC ACTTTATGTC GGTCACATTT CTTATCTCTT GGCTTCTCCT GACACACGTT
  GCAGTGTTTG CCAGGCAGAC CTGATCACTT ACAGCTTTAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss50977772	NES13927090	PERLEGEN	MM_PANEL2	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs37350399					SNP	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977772	NES13927090	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69768942 () rs orientation: forward

Symbol	Name	Function Class
Rr578229	regulatory region 578229	1698 bp distal
Rr578230	regulatory region 578230	1179 bp distal
Rr578231	regulatory region 578231	1325 bp distal
Rr578232	regulatory region 578232	1276 bp distal
Rr578233	regulatory region 578233	275 bp distal
Rr578234	regulatory region 578234	within coordinates
Sptssb	serine palmitoyltransferase, small subunit B	1669 bp upstream
Tssr903	transcription start site region 903	1745 bp upstream
Tssr33558	transcription start site region 33558	1708 bp upstream
Tssr33559	transcription start site region 33559	214 bp upstream