rs37345765 SNP Detail

Summary

• ID
  rs37345765
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113305260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT TACAGGTGGG ACATTTGTAA
  R
  ACAGAAAGGA CCTTAACGAG TTCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ
ss51842351	NES14762156	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G	A	A	G
ss133564340	ENSMUSSNP2170635	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ
rs37345765					SNP	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842351	NES14762156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113305260 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17839	CpG island 17839			931 bp distal
Gm15492	predicted gene 15492			1479 bp upstream
Ogg1	8-oxoguanine DNA-glycosylase 1			Intron
				Noncoding-Transcript-Variant
Rr399830	regulatory region 399830			1413 bp downstream
Rr636489	regulatory region 636489			1578 bp distal
Rr636490	regulatory region 636490			1317 bp distal
Tssr58194	transcription start site region 58194			1286 bp downstream
Tssr58195	transcription start site region 58195			1268 bp downstream
Tssr58196	transcription start site region 58196			1058 bp downstream
Tssr58197	transcription start site region 58197			1035 bp downstream
Tssr62435	transcription start site region 62435			1614 bp upstream
Tssr62436	transcription start site region 62436			1549 bp upstream