rs37339088 SNP Detail

Summary

• ID
  rs37339088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83359303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTCATTA ACAGCCCAGA
  CATGAGGATT AAAACCAGCA TGTTCTGTGT TTTAGCTAAA TCCCAGAAGT TTGTTGCAGC
  AATTGAAACT CTAATCTGAT GACCACTATG CTGCTTGGAG AGGCACACTC AGACTGCAGA
  TGCCCTTCCT AGCTAGAGGG GCCTGACTCT GAGGCCTTTG TCTCATACGG AGGACGGAAC
  R
  GAAAGAATAA GGCTCTGTGG TTATGCTCAG GGTAACTTCT TTCTAACCCC TTTATTTCAC
  TTGGGGCAAG CCATGGTGGT CACAGCTATA CTTCTTTCTT GAATTTATTT GGAGCTAATA
  GGTGACAGTC CCTGAGCAAG GGAGGCTTGT ATGACTGACA TCATTTTCCC CTAGAGTTAA
  TTTGCCTTGT GTCTGGCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
ss51561914	NES14683374	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		G	A		A	G
ss135415334	ENSMUSSNP4693537	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
rs37339088					SNP	G	G	G	G	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51561914	NES14683374	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83359303 () rs orientation: forward

Symbol	Name	Function Class
Rr578862	regulatory region 578862	978 bp distal
Rr578863	regulatory region 578863	1478 bp proximal