rs37332590 SNP Detail

Summary

• ID
  rs37332590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:100684400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGATTGTG TCTCATTCTT
  CAAGGTGTTG GGAACATTGG GGCAGCATCC TCTTGTCTCG ATCTGAACAA ATTGGCTCTG
  CCTTGCAGGA GATCATGAAT AGAATGCCAA TGGGTGCTAT AGAGAAGGTA TATTGCCACA
  GGCAACAAGA TCCTGGAAGC CATTTTTCTT TTGAACATAT CTCTTAGATG ATCATGGGAA
  Y
  GATGTCCAGC GCCACAGGAA TAAAGAATGA CTTCACAAAC TCTGGAAAGA GTGAAGAAGA
  AAAAAAAGAA AAAAAAAAAG GTCATCTCAG ACTCAAATAC ATAAACAGTT GACATTTTCT
  GGGGTGTTTT TTCTTTCTTT CTTTTGCTAC CTCCATAGCA AGGGTAACTC AAGGTTTTAA
  ATAAAAAGGG AGCAGGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51794143	NES14788291	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37332590					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794143	NES14788291	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100684400 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gxylt2	glucoside xylosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr635698	regulatory region 635698			155 bp proximal
Rr635699	regulatory region 635699			1988 bp proximal