rs37316946 SNP Detail

Summary

• ID
  rs37316946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75463406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACAGAAC ATTAGAGAGG
  ATGCTTTGGC AAAGCTTCCA CTCCACGTCA ACAAACCAAC TCTCTGCACC TCACAACCGT
  TTCTGACAAA CAGGCACACT ACTTTGCAAC TTCTTCTATC TGCTTCCAGT ACTACCACCC
  ACCTCCCCAC TCTTTCTTCC TAAGCCGACA ACTCTGGTCA GAAACTGGAC TTTCGGAGGA
  Y
  TAGACTCTGA AGATCTGTGT GACCTTGGGC ACGTCATTTG CTTCTACAGT AGTCTCATTA
  GCATCCCAAA GTGAAAGCGC TTCGAGGGCA CTTGAGAAGT ATACATCCAT CTGACGTATT
  GGAGTCAAGA GGCACAAACC TTCCGAGTTA AGAATCACCT CCTCAGAGAG GAAATTGGAA
  CTGAGTCGGA ACTGTCAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	KK/HlJ	PWD/PhJ
ss51557837	NES14678956	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	KK/HlJ	PWD/PhJ
rs37316946					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51557837	NES14678956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75463406 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13269	CpG island 13269	225 bp proximal
Pdcd10	programmed cell death 10	Intron
Rr578348	regulatory region 578348	within coordinates
Rr578349	regulatory region 578349	702 bp proximal
Rr578350	regulatory region 578350	738 bp proximal
Rr578351	regulatory region 578351	1459 bp proximal
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1	1394 bp upstream
Tssr29563	transcription start site region 29563	1411 bp upstream
Tssr29564	transcription start site region 29564	1431 bp upstream
Tssr29565	transcription start site region 29565	1477 bp upstream
Tssr29566	transcription start site region 29566	1495 bp upstream
Tssr33586	transcription start site region 33586	690 bp downstream
Tssr33587	transcription start site region 33587	804 bp downstream
Tssr33588	transcription start site region 33588	825 bp downstream