rs37311644 SNP Detail

Summary

• ID
  rs37311644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:66060279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCAAAGC ATCTCTGTGC
  TCAATTCAGG CAGGTCTGCT GACAGGTGCT CAGAACCCTG TCAGAATGAC CTGCTGGTAT
  AAACACTTGA GTTTCTGAAA GTAAGCTCTC TTAAAACACC TGCACTTCTG ACTGCCTGAG
  GTTTTGGGGA AAACATGTAT CCTCCATCAT TTGAAATCTG GTGCCTGTGG AGCTAAGTTA
  Y
  CCATGTTCCT CTGCTACCAA ACTTTCTCTC TGTCCCACCA ACCCTGGGTA CCAGTACTTC
  AACTGCAGCA GAGACCAAGA TACAGTTTTT GTCTTCTTGT TCTGTTTAAA TGAGATTTGA
  TGACAACCAG AGATTGTTTG CTTCTCTATA GGGCTGTCAC ACAGTGGAAG TTGGTGGAAA
  CAGAGGCTAC CTTCCAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NZW/LacJ
ss51538511	NES14687558	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NZW/LacJ
rs37311644					SNP	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51538511	NES14687558	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66060279 () rs orientation: forward

Symbol	Name	Function Class
Rr577797	regulatory region 577797	904 bp proximal
Veph1	ventricular zone expressed PH domain-containing 1	Intron