rs37306530 SNP Detail

Summary

• ID
  rs37306530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113581377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCACAT TTTTAATCTC
  AGCACTCCGG AGGGAAAGGC AGGCTGATCT CTGTGAGTTC GAGGCCAGCC TGGTCTACAG
  AGGGAGTACA AGGACAGCCA AGACTACACA GAGAGACCCT GTCTCGAAAA ACAACAACAA
  CAACAAATTT TAAAAGAAAA CGAGAATGAA CAGAGTTGTG ACCCAAGCAT GACAAGCATT
  Y
  TGAATAAACG GGATTCGTGG ACTGTGCCCA TCACAGCTAA CAAGGTGCAA GAGAGCTTGG
  AGCAACCCTT AGGCGGAGGT GGGAATGTGT GGGCGCCCCC TAACGACAAG ATCCGCTAGT
  GGTCAGCGGG TGCTTGTAAC CGGGGACAGG GTAGCTCTTA GTCTTCACAT CGCGAGTGGA
  GGAATCTTGT TTACCCCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51840385	NES14766156	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37306530					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51840385	NES14766156	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113581377 () rs orientation: forward

Symbol	Name	Function Class
Brk1	BRICK1, SCAR/WAVE actin-nucleating complex subunit	356 bp upstream
Cpgi17850	CpG island 17850	within coordinates
Gm67049	predicted gene, 67049	within coordinates
Rr636549	regulatory region 636549	within coordinates
Rr636550	regulatory region 636550	90 bp proximal
Rr636551	regulatory region 636551	309 bp proximal
Rr636552	regulatory region 636552	858 bp proximal
Tssr58230	transcription start site region 58230	333 bp upstream