rs37304854 SNP Detail

Summary

• ID
  rs37304854
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:79995092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCCCATG ACTTCACTTC
  CACTGGATCT CATGCTGTCT TCTGGCTTCT GTAGGCACCA AGCACACACA TGGTAAACAG
  ACATACATGC AAGCCAAATA CTTATGCACA TAAAATGTGT AGGTGTCTGA TACAAATTCA
  GTGAGAAATA TAAATTTTTG AAAATCACTC ATTTCAGATT TTTTTTTTAA TTTCATCAGT
  M
  CTAATTTCAG GATAGTCTGC AAATTTTAGA AAAGGGCCAG GATAATATAG GAGAATGCTC
  TTGTTTCTTT CAGGGTGGTA GGCACAACAG AACAGATTAT TTGCACAAGA AAAAGTTCAT
  TGGAAAAGTG AATGAGTGTT AAGAGAAACA ACTGCAATAA TATTGACAAG CTTTAGTTCA
  GTTATTGTCT GACATCAGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51705507	NES14809923	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37304854					SNP	A	A	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51705507	NES14809923	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79995092 () rs orientation: forward

Symbol	Name	Function Class
Gm4409	predicted gene 4409	within coordinates
Lrrtm4	leucine rich repeat transmembrane neuronal 4	768 bp upstream
Rr632526	regulatory region 632526	578 bp proximal
Rr632527	regulatory region 632527	789 bp proximal
Rr632528	regulatory region 632528	1044 bp proximal
Rr632529	regulatory region 632529	1545 bp proximal
Tssr57230	transcription start site region 57230	796 bp upstream
Tssr57231	transcription start site region 57231	848 bp upstream
Tssr57232	transcription start site region 57232	899 bp upstream
Tssr57233	transcription start site region 57233	959 bp upstream