rs37300943 SNP Detail

Summary

• ID
  rs37300943
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82939385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTATCGAC ACTTAACTTT CGGGAGATTC CCCTGACACC
  CCCCCCCCCC CTAGATTAAG TTAACCATTA CTGCGAAGTG CTTACCAGGC ACGCTGCACC
  S
  GTTTCCTAAC CTCCTTTAGT GTTTTGTTGG AATCTCATTT TTTTTTTGGT CAACTTTTCA
  TGCTAGACTG TACGTTCCTT GGGGGCAGGG ACTTGACCAT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50990072	NES13925803	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37300943					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990072	NES13925803	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82939385 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fga	fibrinogen alpha chain			Intron
				mRNA-UTR
Rr375250	regulatory region 375250			373 bp downstream
Tssr917	transcription start site region 917			377 bp downstream
Tssr29668	transcription start site region 29668			1869 bp downstream
Tssr29669	transcription start site region 29669			1819 bp downstream
Tssr29670	transcription start site region 29670			1782 bp downstream
Tssr29671	transcription start site region 29671			1233 bp downstream
Tssr29672	transcription start site region 29672			1140 bp downstream
Tssr29673	transcription start site region 29673			1093 bp downstream
Tssr29674	transcription start site region 29674			1059 bp downstream
Tssr29675	transcription start site region 29675			1053 bp downstream
Tssr29676	transcription start site region 29676			1039 bp downstream
Tssr29677	transcription start site region 29677			1024 bp downstream
Tssr29678	transcription start site region 29678			949 bp downstream
Tssr29679	transcription start site region 29679			890 bp downstream
Tssr29680	transcription start site region 29680			866 bp downstream
Tssr29681	transcription start site region 29681			764 bp downstream
Tssr29682	transcription start site region 29682			733 bp downstream
Tssr29683	transcription start site region 29683			702 bp downstream
Tssr29684	transcription start site region 29684			663 bp downstream
Tssr29685	transcription start site region 29685			617 bp downstream
Tssr29686	transcription start site region 29686			528 bp downstream
Tssr29687	transcription start site region 29687			475 bp downstream
Tssr29688	transcription start site region 29688			450 bp downstream
Tssr29689	transcription start site region 29689			426 bp downstream
Tssr29690	transcription start site region 29690			398 bp downstream
Tssr29691	transcription start site region 29691			348 bp downstream
Tssr29692	transcription start site region 29692			330 bp downstream
Tssr29693	transcription start site region 29693			303 bp downstream
Tssr29694	transcription start site region 29694			257 bp downstream
Tssr29695	transcription start site region 29695			244 bp downstream
Tssr29696	transcription start site region 29696			223 bp downstream
Tssr29697	transcription start site region 29697			196 bp downstream
Tssr29698	transcription start site region 29698			46 bp downstream
Tssr29699	transcription start site region 29699			1 bp upstream
Tssr29700	transcription start site region 29700			14 bp upstream
Tssr29701	transcription start site region 29701			46 bp upstream
Tssr33800	transcription start site region 33800			955 bp upstream
Tssr33801	transcription start site region 33801			592 bp upstream
Tssr33802	transcription start site region 33802			468 bp upstream