rs37292939 SNP Detail

Summary

• ID
  rs37292939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69664603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTACTAG ACTATTTACT
  GATTTATATA GGTCCTCTTT CTTCATGGGA TAGGACCATA AAAACGGCTC TTGAAAAGAT
  AAGTTCATTA GGAATTGATA AGTCCTAGGA TCATGAAAAC TGACTTCAGT CTCTTGGACT
  CCAGTTACTA AGTCAGAAAG CCACGGAGCA TCCATGGCAC CAACAGGAAC CAGACTGTGA
  Y
  GACCCTAGAG AGACTGCCAT TCACCCCTGC CCTCTGGGTG ACCGTTAGGT TCTCCACTCA
  TGAGAATAAA TCTCCAGAGC CTTCTGGTCT GGTCGCTTAC AGCTGGTACT CTACAGTTTA
  ATTAATGGCT ACACTTGCAA AAATTATACC TACATTTTCC AGTGTGTCCA GTGAAGCAGT
  AGTACTCCAA GAGGCTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50978648	NES13928514	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37292939					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978648	NES13928514	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69664603 () rs orientation: forward

Symbol	Name	Function Class
9530051E23Rik	RIKEN cDNA 9530051E23 gene	897 bp downstream
Rr375162	regulatory region 375162	931 bp downstream
Rr578222	regulatory region 578222	1806 bp distal
Rr578223	regulatory region 578223	1913 bp distal
Rr578224	regulatory region 578224	380 bp distal
Rr578225	regulatory region 578225	598 bp distal