rs37288981 SNP Detail

Summary

• ID
  rs37288981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26183523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAAAGAG TATTACTGGA
  TAAGAGGGAG ATTGATGGGA ACGGGAGAGA ACTGGGAAAG GGAAATGAGA GAGACCAGAG
  TATGTAGCAG TACAAGTGTG AAGAGGATAA AAGACCAAAG TTAACAAAAA CTCTAGGAAA
  AATACAGCAA CAATAAAGGC AACAAAAAAT TTATTAGAAT GGACAGTGGA CATGCTTTTG
  Y
  AAATGAGTTG TTTCTACTAG CTTGATCAAA TTCCAGTTCT ATAAGGTCTG AAATTGTGAA
  AAATATTGTG AGTAGAGAGA ATTTAATTTT TTGATATGTT TGCATATGCA AGAAAGAAAA
  ACATAAAAGA GATGGAGGGG AAGGGAAGGG AACGGAGATG AAAGCGGATG ATCAGCTCTG
  GAGATCAAGA CTGACTAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51446526	NES14439110	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37288981					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51446526	NES14439110	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26183523 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574304	regulatory region 574304	1666 bp proximal