rs37275088 SNP Detail

Summary

• ID
  rs37275088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57522298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTCTAT TGGTTGCATT
  CTCTTCCAAT AGCAGAAAAG AAAAGTGTTA TTTTCCCAGC TAATTAGCAT ACTCTGGGAA
  AGAAACCAAC TATGTTTCAT TCTCTGCTAG TGTCAAATAT AGACATAAAA AACCAAGGTT
  TTTAAGGAAT CTGGGTTCAA AAGGATGACA GGAAAAGAAG TTTTTAAAAG TTTAAATAAA
  Y
  GAATGGCACC AAATGTTGTA TATGTTCTAC TATGAGAAGT ATGCAAGTTC CCTCCCTCCC
  TCCCTCCCTC CCTCCCTCCT TCCCTCCCTC CCTCCCTCCC TCCCTCCCTC CCTCCCTCTG
  TGTTTGGAAT AGCCTAGTCT GTTCTTAAAA TTCAGATCTT GCCTCAAGTC CCTATTTCTG
  TACACCTCCT GGAATTACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51315043	NES13763344	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs37275088					SNP	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315043	NES13763344	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57522298 () rs orientation: forward

Symbol	Name	Function Class
Gm45193	predicted gene 45193	within coordinates
Gm66279	predicted gene, 66279	within coordinates
Rr631144	regulatory region 631144	1425 bp distal
Rr631145	regulatory region 631145	within coordinates