rs37274128 SNP Detail

Summary

• ID
  rs37274128
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108450847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACCTCT AGGAGAGGCG
  AGGCTGTGGA AACCTGGAAA TGTGCAAGAG GAGTCCTGTG TAGGGGACCT AAATATCCTC
  AGGTGGGGAG CCAGATGATG GGAACCCAGA GACCTCCAGG AGAGGGTTCT GGGTTGGGGA
  ACCTGACACT GGCAGGTGAA AGCCTGGGCC TGGAGGACCC TGAGGTCTGT AAGTAATTGA
  M
  TGAAGCCCAG GAAGCCCCAG CATTTGTAGG TGAGGTCCCT GGAGACCTCA GCACCTAGAG
  GTGGGAGTTT GGGGTAGGTT GGACCGTGGT GTCCTTTCTA CTCATGGTTC AGCTCCTGTC
  ACTTAGGCCA GCCTCCCTGA ATTGAGGATC CAACATTACA GACTTTCTGG GTGACTAGTA
  ATGGAAATAT GGGTGGGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51813695	NES14768575	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	C	A	C	C	C	C		C	C	A	C		C
ss321892771	CHEV_6_108423880	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37274128					SNP	C	A	A	A	C	A	C	C	C	C	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51813695	NES14768575	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108450847 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	1280 bp upstream
Gm44101	predicted gene, 44101	1311 bp upstream
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	1671 bp distal
Rr636116	regulatory region 636116	1242 bp distal
Rr636117	regulatory region 636117	689 bp distal
Tssr58061	transcription start site region 58061	843 bp downstream
Tssr58062	transcription start site region 58062	804 bp downstream
Tssr58063	transcription start site region 58063	785 bp downstream
Tssr58064	transcription start site region 58064	758 bp downstream
Tssr62386	transcription start site region 62386	1337 bp upstream