rs37271838 SNP Detail

Summary

• ID
  rs37271838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57514686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGCAAGA GGTTGAACTG
  GGACTACTTG GCTATGTCTC TCTTCATAGC CAGGCTCTCC GCTTCTTTCT CATGAGAGGT
  AAGTGTGAAG ACACTGAACT CATATTCACT ATGCAGTACT GCCCAGAGCC TTTCTCTCTA
  GAGCATCTTT GATGTCTTTC CTACACGCAC TGCAGAAACA GCACCACCTA ATTCTGAAGC
  R
  TTTACACACC CAGGCCTTTT CTTTTATAGA CTTTCTGGTG AGATTTGTTG CCTGTTCTGT
  TTTTAGGACT GATGATGATT TTGTGCTATG TGAAGAGGTA TAAATGTGGC CTTTGTCAGT
  CTGTGATCTC AGCAGATCTC TTTCTCTTGC AGATTGCTTT GGTATTTTTC AACAAGAAAA
  GGAGAGGGAG CGAGTTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51315095	NES13763432	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37271838					SNP	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315095	NES13763432	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57514686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17484	CpG island 17484	1834 bp distal
Gm45193	predicted gene 45193	within coordinates
Rr399669	regulatory region 399669	1983 bp downstream
Rr631142	regulatory region 631142	1785 bp distal