rs3727087 SNP Detail

Summary

• ID
  rs3727087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95784099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGTGATG GAGCTGCAAT
  CAGGAGTCTC TTTTTGCTGT ATTTCTTTGG GAGGTGGTGG TTTTGGTTTT TGAGACAGGG
  TTTCTCTCTG TATCCCTGGC AGTTCTAGAA CATTTTGCAG ACCAGGCTGG CTTCAAAATC
  AGAGATCTGC CTGCCTCTGC CTGGAAAGTG CTGGGATTAA AGGTGTGCGC CATCACATCC
  R
  GCTACTGAAT TTCTTTACTG TTGCCCTAGC CCCCCTTATT TGAAGGTATA CATTTCCTAG
  TGGGTTTCCG GATTTCCCTG CTACAATGTA AACTTCTGGA AGTAGGCCCT GTGTCTGTTC
  TCATCATGGC TGTATGACTC AGAGTAGGAA CTGAGTAATA TTGGTCATGT GGACTAATTA
  ATGCCCAGGC ATTCACTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5103407	WI_WGS_4_93628619	WI	MOUSE	f	SNP	A			G
ss45592031	mCV22849021	ABI	CRAMUS_MOUSE	f	SNP		A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3727087					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95784099 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			323 bp distal
Rr595486	regulatory region 595486			526 bp proximal
Rr595487	regulatory region 595487			1446 bp proximal
Rr595488	regulatory region 595488			1469 bp proximal
Rr595489	regulatory region 595489			1602 bp proximal