rs3727079 SNP Detail

Summary

• ID
  rs3727079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95784091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGATCCC ATGTGATGGA
  GCTGCAATCA GGAGTCTCTT TTTGCTGTAT TTCTTTGGGA GGTGGTGGTT TTGGTTTTTG
  AGACAGGGTT TCTCTCTGTA TCCCTGGCAG TTCTAGAACA TTTTGCAGAC CAGGCTGGCT
  TCAAAATCAG AGATCTGCCT GCCTCTGCCT GGAAAGTGCT GGGATTAAAG GTGTGCGCCA
  Y
  CACATCCGGC TACTGAATTT CTTTACTGTT GCCCTAGCCC CCCTTATTTG AAGGTATACA
  TTTCCTAGTG GGTTTCCGGA TTTCCCTGCT ACAATGTAAA CTTCTGGAAG TAGGCCCTGT
  GTCTGTTCTC ATCATGGCTG TATGACTCAG AGTAGGAACT GAGTAATATT GGTCATGTGG
  ACTAATTAAT GCCCAGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5103399	WI_WGS_4_93628611	WI	MOUSE	f	SNP	C			T
ss147068251	ENSMUSSNP535750	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3727079					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95784091 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			315 bp distal
Rr595486	regulatory region 595486			534 bp proximal
Rr595487	regulatory region 595487			1454 bp proximal
Rr595488	regulatory region 595488			1477 bp proximal
Rr595489	regulatory region 595489			1610 bp proximal