rs37270621 SNP Detail

Summary

• ID
  rs37270621
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:3600774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGAAAT TTGTGAAAGT
  TGAGGCACGG ATATCATTAA GTTCAAGACC AGGTGGGGCT ACACAGTATA AAAGGCTCAT
  CCACTGATAT TTTATATTGC TCTCAACTTC TATAATGAAG TCTTGCTATC TTTGCAGTAA
  GTAAGAACTG TTACATGAAC TCAGTATCTT TATAGGAAGA AATGTCAGAG TACTTGCTCT
  M
  TGAAAAAAGG CAGAGTAAGA ATATATCAAG AGACAGTGTC TATAGACCAG AAAGGGACCC
  TCACCTGAAA TCTGCATTGT CCAAAACTCA GATCTTGACT TATAGTCTCC AGAACTGTAA
  ATAAATTTCT GTACTTTAAA TACTCAAGCT ATGGTATTTT GTTATAGCAA CCTGTTCAAA
  CAAAAAACAA GAGATAAACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50588968	NES13656409	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37270621					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50588968	NES13656409	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3600774 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp6r3	protein phosphatase 6, regulatory subunit 3			Intron
				Noncoding-Transcript-Variant
Rr542430	regulatory region 542430			1075 bp proximal
Tssr157395	transcription start site region 157395			1347 bp upstream