rs3727058 SNP Detail

Summary

• ID
  rs3727058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95784082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGTTGT CTGGATCCCA
  TGTGATGGAG CTGCAATCAG GAGTCTCTTT TTGCTGTATT TCTTTGGGAG GTGGTGGTTT
  TGGTTTTTGA GACAGGGTTT CTCTCTGTAT CCCTGGCAGT TCTAGAACAT TTTGCAGACC
  AGGCTGGCTT CAAAATCAGA GATCTGCCTG CCTCTGCCTG GAAAGTGCTG GGATTAAAGG
  Y
  GTGCGCCATC ACATCCGGCT ACTGAATTTC TTTACTGTTG CCCTAGCCCC CCTTATTTGA
  AGGTATACAT TTCCTAGTGG GTTTCCGGAT TTCCCTGCTA CAATGTAAAC TTCTGGAAGT
  AGGCCCTGTG TCTGTTCTCA TCATGGCTGT ATGACTCAGA GTAGGAACTG AGTAATATTG
  GTCATGTGGA CTAATTAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5103378	WI_WGS_4_93628602	WI	MOUSE	f	SNP	C			T
ss45595670	mCV22849010	ABI	CRAMUS_MOUSE	f	SNP		C	T	T	T
ss147068245	ENSMUSSNP3071727	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss321216036	CHEV_4_95562536	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3727058					SNP	C	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95784082 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			306 bp distal
Rr595486	regulatory region 595486			543 bp proximal
Rr595487	regulatory region 595487			1463 bp proximal
Rr595488	regulatory region 595488			1486 bp proximal
Rr595489	regulatory region 595489			1619 bp proximal