rs3727039 SNP Detail

Summary

• ID
  rs3727039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70318732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACAAAAC TTGGCAGGGC
  TATGCATGTC TGTAAGCTTA GCACTGGGAG GGACAGAGAT GCTCTAAATC ATTGCATTAT
  CAATATTGAC AGATCCTGGG GTCTTGCTAG ACAGCTGCTA ACCAGCCAGC CTAGCTGGAA
  ACGCAAGCTT CTGGTTCACT GAGCGATCCT GTCTCAAGGG AATAAGGCAG TCAGTGACAG
  R
  GGAAAACGCT TGCCATCTTT CTCTGGCCAT TACATATACC TACACAGACA TACACACCTG
  CACATTCATA TGCATACACA CATGCACATA CCACACACTG AAAAAATTAA TTAAGATAAA
  TCTTAAAAGA ATATTCATCT TCCGACAGGT GGTTGTGGCT CACACCTTTA ATCCCAGCAC
  GTAGGAGGCA AAAGCAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5103359	WI_WGS_4_67727225	WI	MOUSE	f	SNP	A			G
ss146495733	ENSMUSSNP2585484	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3727039					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70318732 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdk5rap2	CDK5 regulatory subunit associated protein 2			Intron
				Noncoding-Transcript-Variant
Rr593869	regulatory region 593869			1101 bp distal
Rr593870	regulatory region 593870			1382 bp proximal
Rr593871	regulatory region 593871			1807 bp proximal