rs37268872 SNP Detail

Summary

• ID
  rs37268872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83727918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGCACT AAAACATGTC
  ACCAAGTGTT ATTATATTTT AATAGCAAAA ATAAAGCATG CTCCTTGTAC CCCGAGAAAC
  AAAGGAAAGA CTGTTAATTG CCTGATCCGT TGTCTCCAGC CCTGTGAAAC CTGGAGCTCA
  TATACAGGTG AACAGTGCAG GTGTGGAGAG ACACCTGTAC CTCTGTTGGA CGGTGACCCA
  R
  CAGGCTGGGT TTCTTGGTAT ACTGATATTT GTGGGGCTTA ACCTTCTATG TCAACTAGAT
  TTTAGGATCA CCTAAGAGAC GTGCAATTTG GGCATGTGTG TAAGAGCTTT TCCAGAGCAG
  TTTAATTAAG AATGGAAGAC TTGCCCAGAA TGTGAGTGGC AACATCCCCT AAGGTGGGGT
  CCCGAGCTGA ATAAAAAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51352417	NES13741831	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs37268872					SNP	G	G	G	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51352417	NES13741831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83727918 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6v1b1	ATPase, H+ transporting, lysosomal V1 subunit B1			Intron
				mRNA-UTR
Gm66892	predicted gene, 66892			within coordinates
Rr632931	regulatory region 632931			187 bp distal
Rr632932	regulatory region 632932			434 bp distal