rs3726504 SNP Detail

Summary

• ID
  rs3726504
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95784036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATTTTAA CTCAAGAAGA
  GTCTGTAGTT GGGAGTTTGC TGGCTTTTCC TGTTGTCTGG ATCCCATGTG ATGGAGCTGC
  AATCAGGAGT CTCTTTTTGC TGTATTTCTT TGGGAGGTGG TGGTTTTGGT TTTTGAGACA
  GGGTTTCTCT CTGTATCCCT GGCAGTTCTA GAACATTTTG CAGACCAGGC TGGCTTCAAA
  M
  TCAGAGATCT GCCTGCCTCT GCCTGGAAAG TGCTGGGATT AAAGGTGTGC GCCATCACAT
  CCGGCTACTG AATTTCTTTA CTGTTGCCCT AGCCCCCCTT ATTTGAAGGT ATACATTTCC
  TAGTGGGTTT CCGGATTTCC CTGCTACAAT GTAAACTTCT GGAAGTAGGC CCTGTGTCTG
  TTCTCATCAT GGCTGTATGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss5102818	WI_WGS_4_93628556	WI	MOUSE	f	SNP	C	A
ss321216035	CHEV_4_95562490	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs3726504					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95784036 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			260 bp distal
Rr595486	regulatory region 595486			589 bp proximal
Rr595487	regulatory region 595487			1509 bp proximal
Rr595488	regulatory region 595488			1532 bp proximal
Rr595489	regulatory region 595489			1665 bp proximal